Information for 1-GGTCAGTCCC (Motif 6)

A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
Reverse Opposite:
A C T G C T A G C T A G C T G A G A T C G C A T C T A G G T C A A T G C T A G C
p-value:1e-12
log p-value:-2.794e+01
Information Content per bp:1.656
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.21%
Number of Background Sequences with motif1177.8
Percentage of Background Sequences with motif2.41%
Average Position of motif in Targets42.1 +/- 22.4bp
Average Position of motif in Background50.0 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGTCCC
AGGTCA-----
 A C G T A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTCAGTCCC
GGAAATTCCC
 A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGTCCC
AGRGGTCA-----
 A C G T A C G T A C G T A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTCAGTCCC
GGAAATCCCC
 A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGTCAGTCCC
GGAAATTCCC
 A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

POL002.1_INR/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGTCAGTCCC
--TCAGTCTT
 A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGTCCC---
AGGTCANTGACCTN
 A C G T A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C A C G T A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGTCAGTCCC--
GGGGATTCCCCC
 A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGTCCC
TRAGGTCA-----
 A C G T A C G T A C G T A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTCAGTCCC--
AGGGGATTCCCCT
 A C G T A T C G T A C G C A G T G A T C C G T A C T A G G A C T G A T C G A T C G T A C A C G T A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T