Information for 13-GGCGCTACAAGAC (Motif 39)

A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
Reverse Opposite:
C T A G G A C T A T G C A C G T A C G T A C T G A G C T G C T A A C T G A G T C A T C G A G T C A G T C
p-value:1e-7
log p-value:-1.672e+01
Information Content per bp:1.757
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.7 +/- 26.6bp
Average Position of motif in Background50.3 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCTACAAGAC
AGCTCGGCGCCAAAAGC-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCTACAAGAC
CCTTCGGCGCCAAAAGG-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G A C G T

E2F1/MA0024.3/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCGCTACAAGAC
TTTGGCGCCAAA----
 A C G T A C G T A C G T A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T A C G T A C G T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCGCTACAAGAC
TGGCGGGAAAHB--
 A C G T A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G A C G T A C G T

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCGCTACAAGAC
TTCGCGCGAAAA---
 A C G T A C G T A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
A G C T A G C T T A G C A T C G A G T C A C T G A T G C A T C G T C G A C T G A T C G A C T G A A C G T A C G T A C G T

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGCGCTACAAGAC
GGCGGGAAAH---
 A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GGCGCTACAAGAC
GNCTATAAAAGG-
 A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GGCGCTACAAGAC------
--CAAATCCAGACATCACA
 A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GGCGCTACAAGAC--
-------CCAGACAG
 A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GGCGCTACAAGAC
BTKGGCGGGAAA----
 A C G T A C G T A C G T A C T G C T A G A T G C C T A G G T A C C A G T C T G A T A G C G T C A C G T A A T C G C G T A G A T C
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A A C G T A C G T A C G T A C G T