Information for 17-AGTGAGCTGCTAANGA (Motif 32)

C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
Reverse Opposite:
A C G T A T G C C G T A A G C T A G C T G T C A A T C G A G T C C T G A A T C G T A G C C G A T A T G C C G T A A T G C A C G T
p-value:1e-8
log p-value:-1.896e+01
Information Content per bp:1.724
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.8 +/- 21.3bp
Average Position of motif in Background54.6 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:1
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------AGTGAGCTGCTAANGA
ANTTMRCASBNNNGTGYKAAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGTGAGCTGCTAANGA
-GTGACCTT-------
 C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGTGAGCTGCTAANGA---
-BTGACCTCTNNHTGACCY
 C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A A C G T A C G T A C G T
A C G T A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AGTGAGCTGCTAANGA
---AAGGTGTKAA---
 C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGTGAGCTGCTAANGA
---CAGCTGNT-----
 C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGTGAGCTGCTAANGA
----AGGTGTTAAT--
 C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:AGTGAGCTGCTAANGA
--TGACCT--------
 C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--AGTGAGCTGCTAANGA
CTCAGCAGCTGCTACTG-
 A C G T A C G T C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:9
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:AGTGAGCTGCTAANGA---
--TGACCTCTCNNTGACCT
 C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A A C G T A C G T A C G T
A C G T A C G T G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAGCTGCTAANGA
NNNANTGA-----------
 A C G T A C G T A C G T C G T A A T C G A C G T A T C G C G T A A C T G A T G C A G C T C T A G A T G C C A G T C T G A T C G A A C G T A T C G G T C A
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T