Information for 5-GTSTGGTAWT (Motif 23)

C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
Reverse Opposite:
T G C A G C T A A C G T T G C A G A T C A G T C C G T A A T C G C T G A G T A C
p-value:1e-9
log p-value:-2.183e+01
Information Content per bp:1.717
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif160.3
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets46.2 +/- 25.2bp
Average Position of motif in Background52.7 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTSTGGTAWT
GGTCTGGCAT-
 A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTSTGGTAWT
NNHTGTGGTTWN
 A C G T A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------GTSTGGTAWT-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTSTGGTAWT
CTGTCTGG----
 A C G T A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTSTGGTAWT
VBSYGTCTGG----
 A C G T A C G T A C G T A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTSTGGTAWT---
NCNTTTGTTATTTNN
 A C G T A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTSTGGTAWT
GCTGTGGTTT-
 A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTSTGGTAWT
GTCTGTGGTTT-
 A C G T A C G T C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTSTGGTAWT-
-CSTGGGAAAD
 C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T A C G T
A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTSTGGTAWT
CTGTGGTTTN
 C A T G A G C T T A G C A C G T A C T G C T A G A C G T C G T A C G A T A C G T
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G