Information for 2-CCRGCGCCCTCTAGTG (Motif 3)

G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
Reverse Opposite:
A G T C C G T A T A G C G A C T C G T A A T C G C T G A C A T G A C T G A C T G A G T C C T A G A T G C G A T C C T A G C A T G
p-value:1e-20
log p-value:-4.799e+01
Information Content per bp:1.708
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.3 +/- 20.1bp
Average Position of motif in Background46.4 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--CCRGCGCCCTCTAGTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCRGCGCCCTCTAGTG----
ANAGTGCCACCTGGTGGCCA
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:CCRGCGCCCTCTAGTG----
-TAGCGCCCCCTGGTGGCCA
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCRGCGCCCTCTAGTG
--GCCGCCATCTTG--
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCRGCGCCCTCTAGTG
GGTCCCGCCCCCTTCTC
 A C G T G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCRGCGCCCTCTAGTG
---CTGCCCGCA----
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCRGCGCCCTCTAGTG
AGCGCGCC--------
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCRGCGCCCTCTAGTG
--GCNGCCATCTTG--
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCRGCGCCCTCTAGTG
-----GCCATCTGTT-
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCRGCGCCCTCTAGTG
GCTCCGCCCMCY----
 G T A C G A T C C T A G T A C G A G T C A C T G A G T C A G T C G T A C A G C T A T G C C G A T C T G A A T C G G C A T A C T G
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T A C G T A C G T