Information for 14-CCKCTTATGG (Motif 24)

A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G
Reverse Opposite:
G T A C G T A C C G T A G C A T C G T A C G T A C A T G G T C A A T C G A C T G
p-value:1e-9
log p-value:-2.105e+01
Information Content per bp:1.772
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif27.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets50.0 +/- 24.8bp
Average Position of motif in Background47.1 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0008.1_MADS_class/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCKCTTATGG
CCATATATGG
 A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCKCTTATGG
TNCCATATATGG
 A C G T A C G T A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

PB0078.1_Srf_1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCKCTTATGG--
TTCCATATATGGAA
 A C G T A C G T A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T A C G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

SRF/MA0083.3/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCKCTTATGG---
TGNCCATATATGGTCA
 A C G T A C G T A C G T A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCKCTTATGG---
--TTTTATGGCTN
 A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCKCTTATGG----
--NNHTGTGGTTWN
 A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CCKCTTATGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCKCTTATGG--
CCTTTTATAGNC
 A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CCKCTTATGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCKCTTATGG-
--TTTTATTGC
 A G T C A T G C C A G T G T A C A C G T C G A T C G T A A C G T A C T G A C T G A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C