Information for 4-CTGTGTCCTAGAT (Motif 4)

A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
Reverse Opposite:
C T G A G A C T G T A C C A G T C G T A A C T G A C T G C G T A A G T C C G T A A G T C G T C A C T A G
p-value:1e-19
log p-value:-4.391e+01
Information Content per bp:1.793
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.5 +/- 25.4bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CTGTGTCCTAGAT
---TGACCTARTT
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTGTGTCCTAGAT
---TGACCTTGAT
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTGTGTCCTAGAT---
--TTGACCTANTTATN
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTGTGTCCTAGAT
--GTGACCTT---
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTCCTAGAT---
CTAAGGTTCTAGATCAC
 A C G T A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T A C G T A C G T A C G T
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTGTGTCCTAGAT
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGTGTCCTAGAT
-BNTGDCCTTG--
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGTGTCCTAGAT
--NTGACCTTGA-
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTGTGTCCTAGAT
---TGACCTYA--
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTGTGTCCTAGAT
---TGACCTTGAV
 A G T C A C G T A C T G C G A T A C T G G C A T A G T C G T A C A C G T G T C A A C T G C G T A A G C T
A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A