Information for 10-AAGCTTAAAC (Motif 27)

G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
Reverse Opposite:
A C T G A C G T C A G T A G C T C G T A C G T A C T A G G T A C A G C T A C G T
p-value:1e-9
log p-value:-2.236e+01
Information Content per bp:1.844
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif103.5
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets51.6 +/- 24.0bp
Average Position of motif in Background54.1 +/- 36.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-AAGCTTAAAC
CAAGCTT----
 A C G T G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

FOXF2/MA0030.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGCTTAAAC---
CAAACGTAAACAAT
 A C G T G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C A C G T A C G T A C G T
A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGCTTAAAC
NGGATTAA--
 G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AAGCTTAAAC
AANTCATGCGTGAA-
 A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAGCTTAAAC
VRGGATTARN-
 A C G T G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AAGCTTAAAC---
---GCTAAACGGT
 G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGCTTAAAC
RGGATTAR--
 G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGCTTAAAC
AAGAGGATTAG--
 A C G T A C G T A C G T G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAGCTTAAAC
GGGATTAA--
 G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAGCTTAAAC
-GGATTAGC-
 G T C A C T G A A C T G A G T C A C G T A C G T C T G A G T C A T C G A G T A C
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T