Information for 11-CATGTTWCCC (Motif 32)

G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C
Reverse Opposite:
C A T G C A T G A T C G G C T A C T G A C T G A G A T C T G C A A C G T C T A G
p-value:1e-6
log p-value:-1.470e+01
Information Content per bp:1.699
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.98%
Number of Background Sequences with motif164.1
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets37.3 +/- 25.7bp
Average Position of motif in Background51.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CATGTTWCCC
GKVTCADRTTWC--
 A C G T A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATGTTWCCC
GTCATGTGACC-
 A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T

USF1/MA0093.2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATGTTWCCC
GCCACGTGACC-
 A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T

PH0085.1_Irx4/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CATGTTWCCC-
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTWCCC
ANTNNTACATGTANNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CATGTTWCCC-
AAAATACATGTAATACT
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CATGTTWCCC
GKMTCADRTTWC--
 A C G T A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T

PH0161.1_Six1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CATGTTWCCC----
ANNNATGATACCCCATC
 A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C A C G T A C G T A C G T A C G T
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTWCCC
NNTATTACATGTANNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PB0059.1_Six6_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATGTTWCCC----
ANANNTGATACCCNATN
 A C G T A C G T A C G T G A T C C G T A A C G T C T A G A G C T G A C T C G A T T A G C G T A C G T A C A C G T A C G T A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T