Information for 17-GMATCTTAACCACTSA (Motif 30)

T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A C T A G C A G T A C T G C A T G A G C T A C G T C T G A C T G A C A T G G T C A A C G T A C T G A G T C
p-value:1e-7
log p-value:-1.715e+01
Information Content per bp:1.743
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 15.0bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.61
Offset:7
Orientation:forward strand
Alignment:GMATCTTAACCACTSA--
-------AGCCACTCAAG
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GMATCTTAACCACTSA-----
----CATAACCACTTAACAAC
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GMATCTTAACCACTSA-
-------AAGCACTTAA
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GMATCTTAACCACTSA-
-------AASCACTCAA
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GMATCTTAACCACTSA-
-------MRSCACTYAA
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GMATCTTAACCACTSA-----
----CTTAACCACTTAAGGAT
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GMATCTTAACCACTSA-
GANNATTAATCCCTNNN
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GMATCTTAACCACTSA-
GNNNATTAATCCCTNCN
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GMATCTTAACCACTSA
----ACTAGCCAATCA
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A
A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GMATCTTAACCACTSA-
--------ACCACTTAA
 T A C G G T A C G T C A A C G T G T A C A G C T A G C T G T C A C T G A G A T C A G T C G C T A A G T C A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A