Information for 20-ATGGCAATGG (Motif 40)

C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C G T A C T G A G T C A G T C C G T A C G A T
p-value:1e-5
log p-value:-1.272e+01
Information Content per bp:1.964
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 26.9bp
Average Position of motif in Background58.3 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAATGG
CTTGGCAA---
 A C G T C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCAATGG
NNTTGGCANN--
 A C G T A C G T C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAATGG
NTTGGCANN--
 A C G T C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGGCAATGG
TTGGCA----
 C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATGGCAATGG
--AACAAAGG
 C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATGGCAATGG-
--GACAATGNN
 C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCAATGG-----
NNTNNACAATGGGANNN
 A C G T A C G T C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATGGCAATGG
--RACAAWGG
 C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATGGCAATGG-
WATGCAAATGAG
 A C G T C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATGGCAATGG
VRAACAATGG
 C G T A A C G T A C T G A C T G A G T C C G T A C G T A A C G T A C T G A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G