Information for 12-AATAGCACKA (Motif 19)

C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
Reverse Opposite:
A G C T T G A C A C T G C A G T C T A G T G A C G C A T T C G A G A C T G A C T
p-value:1e-8
log p-value:-1.999e+01
Information Content per bp:1.686
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif101.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets44.2 +/- 24.5bp
Average Position of motif in Background48.3 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AATAGCACKA
CCAAAAATAG-----
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AATAGCACKA
DCYAAAAATAGM----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------AATAGCACKA
ATGCTAAAAATAGAA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATAGCACKA
KCCAAAAATAGC----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:5
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AATAGCACKA
GCTAAAAATAGC----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AATAGCACKA
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

MEF2B/MA0660.1/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AATAGCACKA
GCTATAAATAGC----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AATAGCACKA
GAAAAAATTGCAAGG
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

CEBPA/MA0102.3/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AATAGCACKA--
-ATTGCACAATA
 C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A A C G T A C G T
A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATAGCACKA--------
GAAGTANCACGAATNMRAGT
 A C G T A C G T C G T A C T G A A G C T C G T A A C T G G A T C G T C A T G A C A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T