Information for 3-GCHTTRATTGWCCMTC (Motif 4)

T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
Reverse Opposite:
C T A G T G C A A C T G T C A G T C A G C G T A T A G C C T G A T C G A G A C T A G C T C T G A C G T A C G T A T A C G A T G C
p-value:1e-12
log p-value:-2.816e+01
Information Content per bp:1.594
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.84%
Number of Background Sequences with motif244.0
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets49.1 +/- 21.3bp
Average Position of motif in Background50.2 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCHTTRATTGWCCMTC
ANNCATTAATTGCTNGN-
 A C G T A C G T T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCHTTRATTGWCCMTC
ANNCATTAATTGCTNGN-
 A C G T A C G T T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCHTTRATTGWCCMTC
ATTCNTTAATTGCTTGT-
 A C G T A C G T T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T A C G T

PH0042.1_Hmx2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCHTTRATTGWCCMTC
ATTCNTTAATTGCTTGT-
 A C G T A C G T T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCHTTRATTGWCCMTC
ATTNNTTAATTGCTTGT-
 A C G T A C G T T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCHTTRATTGWCCMTC
ATTNNTTAATTGCTTGT-
 A C G T A C G T T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCHTTRATTGWCCMTC
NNATNAATTGTTTNN-
 T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCHTTRATTGWCCMTC
---TTGATTGN-----
 T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCHTTRATTGWCCMTC--
-AATCAATTGTTCCGCTA
 T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C A C G T A C G T
A C G T T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PH0099.1_Lhx9/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCHTTRATTGWCCMTC
CCCATTAATTAATCACC
 A C G T T A C G A G T C G C A T C G A T G A C T T C G A C T G A A C G T A G C T A T C G G C A T A G T C A G T C G T A C A C G T G A T C
A G T C A T G C G A T C C T G A G A C T G A C T T G C A C T G A G A C T A C G T C T G A C T G A C G A T G A T C T G C A A T G C A G T C