Information for 5-SCCSCGCGCSSKCTSA (Motif 13)

A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
Reverse Opposite:
A C G T A T G C C G T A A C T G G T A C A T G C A T C G A T C G A G T C A C T G G T A C A C T G A T G C A T C G A C T G A T G C
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.841
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.7 +/- 17.5bp
Average Position of motif in Background74.3 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:SCCSCGCGCSSKCTSA
--AGCGCGCC------
 A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:SCCSCGCGCSSKCTSA
NTCGCGCGCCTTNNN-
 A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-SCCSCGCGCSSKCTSA
GGCCCCGCCCCC-----
 A C G T A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T

Tcfl5/MA0632.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:SCCSCGCGCSSKCTSA
GGCACGTGCC------
 A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SCCSCGCGCSSKCTSA
ANCGCGCGCCCTTNN-
 A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T

PB0095.1_Zfp161_1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---SCCSCGCGCSSKCTSA
NCANGCGCGCGCGCCA---
 A C G T A C G T A C G T A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
G C A T G A T C C T G A C T A G C T A G G A T C T C A G G A T C C T A G A G T C C T A G A G T C T A C G G A T C G A T C G T C A A C G T A C G T A C G T

SP4/MA0685.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---SCCSCGCGCSSKCTSA
TAAGCCACGCCCCCTTT--
 A C G T A C G T A C G T A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
A G C T G C T A C T G A C T A G G T A C A G T C T G C A G T A C A C T G T A G C T G A C A G T C G T A C G A T C G C A T G A C T G A C T A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:SCCSCGCGCSSKCTSA
CCCCCGCCCCCGCC--
 A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:SCCSCGCGCSSKCTSA
----TGCGCAGGCGC-
 A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
A C G T A C G T A C G T A C G T A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SCCSCGCGCSSKCTSA
GGCACGCGTC------
 A T C G A G T C A T G C A T C G A G T C A C T G A G T C A C T G A T G C T A G C A T C G A C T G A G T C A C G T A T C G G T C A
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T A C G T A C G T A C G T