Information for 6-GCTGGCAAGATGSSCC (Motif 7)

A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
Reverse Opposite:
A C T G A T C G A T G C T A G C A G T C G C T A A C G T A G T C A C G T A C G T A C T G T A G C A G T C C G T A A C T G G T A C
p-value:1e-13
log p-value:-3.153e+01
Information Content per bp:1.762
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.1 +/- 29.0bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCTGGCAAGATGSSCC
-TTGCCAAG-------
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTGGCAAGATGSSCC
GGTGCCAAGT------
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTGGCAAGATGSSCC
CGTGCCAAG-------
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAAGATGSSCC
GCTGTCAA--------
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAAGATGSSCC
RHTGWCAR--------
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCTGGCAAGATGSSCC
-AAGGCAAGTGT----
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCTGGCAAGATGSSCC
--TGCCAA--------
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAAGATGSSCC
CCTGTCAA--------
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCTGGCAAGATGSSCC-
-----CAAGATGGCGGC
 A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCTGGCAAGATGSSCC
VGCTGWCAVB-------
 A C G T A C T G T G A C C G A T A C T G A T C G A G T C C G T A C G T A A C T G T G C A C A G T A C T G A T C G T A C G A T G C A G T C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T