Information for 7-RCASTAATTA (Motif 36)

C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A
Reverse Opposite:
C G A T C G T A C T G A A C G T A C G T G T C A T A G C C G A T A C T G A G T C
p-value:1e-8
log p-value:-1.899e+01
Information Content per bp:1.765
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif248.6
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets53.8 +/- 22.4bp
Average Position of motif in Background51.2 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0062.1_Hoxb7/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--RCASTAATTA----
TNNCATTAATTANTNC
 A C G T A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--RCASTAATTA----
NNNCACTAATTANTNN
 A C G T A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PH0175.1_Vax2/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--RCASTAATTA----
GTGCACTAATTAAGAC
 A C G T A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

POU6F1/MA0628.1/Jaspar

Match Rank:4
Score:0.79
Offset:2
Orientation:forward strand
Alignment:RCASTAATTA--
--ATTAATTAAT
 C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T
A C G T A C G T T C G A G A C T G C A T G T C A G T C A A C G T C A G T C G T A C T G A A G C T

PH0135.1_Phox2a/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--RCASTAATTA----
CAGCATTAATTAGTAG
 A C G T A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T
A G T C T C G A A C T G G T A C T C G A G A C T A G C T C G T A C T G A C G A T A C G T C T G A C T A G A G C T T C A G T A C G

PH0011.1_Alx1_2/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-RCASTAATTA------
CGCATTAATTAATTGGC
 A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

PH0159.1_Rhox6/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--RCASTAATTA-----
NNGCATTAATTAANGCA
 A C G T A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C G T A A T C G T G A C T C G A G A C T G A C T G C T A T C G A A C G T C G A T C G T A C T G A A C T G C A T G A G T C C G T A

PH0072.1_Hoxc8/Jaspar

Match Rank:8
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:RCASTAATTA------
ACNNTAATTACNNCAN
 C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

Alx4/MA0853.1/Jaspar

Match Rank:9
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-RCASTAATTA------
CGCATTAATTAATTACC
 A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C A T C G G A T C C T G A G A C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G C T G C A T G T C A A T G C A G T C

PH0002.1_Alx4/Jaspar

Match Rank:10
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-RCASTAATTA------
CGCATTAATTAATTACC
 A C G T C T A G A G T C C G T A A T C G A C G T C G T A G T C A A G C T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C A T C G G A T C C T G A G A C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G C T G C A T G T C A A T G C A G T C