Information for 11-GCAGGGTCAYTAAGGC (Motif 13)

A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C
Reverse Opposite:
A T C G A G T C A G T C A G C T A G C T C T G A C T A G A C G T A T C G T C G A A G T C T A G C G T A C A C G T C A T G A T G C
p-value:1e-11
log p-value:-2.739e+01
Information Content per bp:1.760
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.2 +/- 24.9bp
Average Position of motif in Background34.2 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC-
-GTAGGTCACTGGGTCA
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C A C G T
A C G T A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:2
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC-----
-NGTGTTCAVTSAAGCGKAAA
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC-----
-NGAGGTCANNGAGTTCANNN
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

NKX6-1/MA0674.1/Jaspar

Match Rank:4
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC
-----GTAATTAA---
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC--
---AGGTCACCCTGACCT
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C A C G T A C G T
A C G T A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PB0176.1_Sox5_2/Jaspar

Match Rank:6
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC
-TATCATAATTAAGGA
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C
A C G T C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC-
--NAGGTCACNNTGACC
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C A C G T
A C G T A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

POU4F2/MA0683.1/Jaspar

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGTCAYTAAGGC
ATGCATAATTAATGAG--
 A C G T A C G T A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:GCAGGGTCAYTAAGGC
------YCATTAMC--
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.48
Offset:12
Orientation:forward strand
Alignment:GCAGGGTCAYTAAGGC----
------------AGGCCTNG
 A T C G G T A C C G T A A C T G A T C G T A C G A C G T A T G C T C G A G A T C A G C T C T G A C T G A A C T G C T A G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G