Information for 1-GAAAGCCTTTAGA (Motif 3)

A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
Reverse Opposite:
A C G T G A T C A C G T C G T A G T C A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A G T C
p-value:1e-13
log p-value:-3.168e+01
Information Content per bp:1.885
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.3 +/- 21.3bp
Average Position of motif in Background51.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAAAGCCTTTAGA
--AAACMATTAN-
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAAAGCCTTTAGA
ACTGAAACCA------
 A C G T A C G T A C G T A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAAAGCCTTTAGA
--AAGCTTG----
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAAAGCCTTTAGA
---ANCGTTTANN
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
A C G T A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAAAGCCTTTAGA---
----CCTTTTATAGNC
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAAAGCCTTTAGA
---NNCAATTANN
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
A C G T A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GAAAGCCTTTAGA
----BCMATTAG-
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAAAGCCTTTAGA----
ACAAGCAATTAAAGAAT
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAAAGCCTTTAGA----
ACAAGCAATTAAAGAAT
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAAAGCCTTTAGA
--CAGCC------
 A C T G C G T A G T C A C G T A A C T G A G T C G T A C A C G T A C G T A C G T C G T A C T A G C G T A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T