Information for 2-ATGAAWRCCA (Motif 22)

C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A
Reverse Opposite:
A C G T A C T G C T A G A G C T C G A T A G C T C A G T A T G C G C T A A C G T
p-value:1e-9
log p-value:-2.289e+01
Information Content per bp:1.736
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.97%
Number of Background Sequences with motif966.8
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets51.1 +/- 29.6bp
Average Position of motif in Background49.7 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATGAAWRCCA
ATTAAA----
 C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------ATGAAWRCCA
NNTNTCATGAATGT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATGAAWRCCA---
GTATAAAAGGCGGGG
 A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATGAAWRCCA---
GTATAAAAGGCGGGG
 A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATGAAWRCCA-----
YTAATTRAWWCCAGATGT
 A C G T A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ATGAAWRCCA
AAAGATCAAAGGAA
 A C G T A C G T A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------ATGAAWRCCA
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATGAAWRCCA
NCYAATAAAA----
 A C G T A C G T A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAAWRCCA--
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ATGAAWRCCA
GGTAATAAAAA---
 A C G T A C G T A C G T A C G T C G T A C G A T T A C G G T C A T C G A C G T A T C G A A G T C G T A C G T C A
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T