Information for 4-AGTSAATGGGGTC (Motif 6)

C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C
Reverse Opposite:
C T A G G C T A A G T C G T A C G T A C A G T C G T C A G A C T G A C T A T G C C G T A A T G C A G C T
p-value:1e-12
log p-value:-2.845e+01
Information Content per bp:1.658
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.0 +/- 23.2bp
Average Position of motif in Background50.7 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGTSAATGGGGTC-
NNTNNACAATGGGANNN
 A C G T A C G T A C G T C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGTSAATGGGGTC
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGTSAATGGGGTC----
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

GLI2/MA0734.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGTSAATGGGGTC--
---CAGTGTGGTCGC
 C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGTSAATGGGGTC
AAAACAATGG----
 A C G T C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGTSAATGGGGTC------
--NTNNNGGGGTCANGNNN
 C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGTSAATGGGGTC
-GACAATGNN---
 C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTSAATGGGGTC-
GGGTCAACGAGTTCA
 A C G T C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C A C G T
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGTSAATGGGGTC-----
--AGAGCGGGGTCAAGTA
 C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGTSAATGGGGTC--
---NNHTGTGGTTWN
 C T G A T A C G C G A T T A C G C T G A C T G A A C G T C T A G C A T G C A T G T C A G C G A T A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G