Information for 2-GHATGTGGTATTA (Motif 3)

A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A
Reverse Opposite:
C G A T C G T A C G T A A C G T G T C A A T G C A G T C G T C A A G T C C T G A A C G T C A G T A G T C
p-value:1e-13
log p-value:-3.178e+01
Information Content per bp:1.843
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.6 +/- 24.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0162.1_Six2/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GHATGTGGTATTA-----
-AATGGGGTATCACGTTT
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PH0165.1_Six6_1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GHATGTGGTATTA-----
-AATAGGGTATCAATTAT
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

Six3/MA0631.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GHATGTGGTATTA-----
-GATAGGGTATCACTAAT
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GHATGTGGTATTA-----
-GATAGGGTATCACTAAT
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GHATGTGGTATTA-----
-GATGGGGTATCATTTTT
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GHATGTGGTATTA
ACAGGATGTGGT----
 A C G T A C G T A C G T A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GHATGTGGTATTA--
------GGGATTANN
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GHATGTGGTATTA--
-----GNGGATTAGN
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GHATGTGGTATTA-
------GGGATTAA
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GHATGTGGTATTA
NNHTGTGGTTWN-
 A C T G G C T A C G T A A G C T A C T G A C G T A C T G A T C G A C G T C G T A C G A T C G A T C G T A
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T