Information for 5-CACGTATCTT (Motif 16)

A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
Reverse Opposite:
C G T A C G T A A C T G G T C A G A C T C G T A G A T C T A C G A C G T A C T G
p-value:1e-10
log p-value:-2.384e+01
Information Content per bp:1.844
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets39.1 +/- 26.9bp
Average Position of motif in Background46.5 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CACGTATCTT
GCACGTACCC-
 A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T

Hes2/MA0616.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CACGTATCTT--
GCACGTGTCNNNN
 A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T A C G T A C G T
A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CACGTATCTT
GCACGTAY---
 A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CACGTATCTT
GGCACGTGNC--
 A C G T A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CACGTATCTT
BGCACGTA----
 A C G T A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CACGTATCTT
GGCACGTGTC--
 A C G T A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CACGTATCTT
GCACGTNC---
 A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CACGTATCTT
ACACGTGGC--
 A C G T A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CACGTATCTT
CACGTGDC--
 A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CACGTATCTT
CACGTGNC--
 A G T C C G T A A T G C C A T G A C G T C G T A A C G T A G T C G A C T C G A T
G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C A C G T A C G T