Information for 1-CTTCATGGCC (Motif 1)

G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C
Reverse Opposite:
A C T G A C T G A G T C G T A C C G T A A C G T A C T G C T G A C G T A C A T G
p-value:1e-13
log p-value:-3.202e+01
Information Content per bp:1.879
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif27.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets45.4 +/- 29.9bp
Average Position of motif in Background58.0 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTTCATGGCC
GTTAATGGCC
 G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTCATGGCC-
TTTTATGGCTN
 G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CTTCATGGCC--
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTTCATGGCC--
ACATTCATGACACG
 A C G T A C G T G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTTCATGGCC
TGATTTATGGCC
 A C G T A C G T G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0073.1_Hoxc9/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTCATGGCC---
NNAATTAATGACCNNN
 A C G T A C G T A C G T G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTCATGGCC
TTTAATTGCN
 G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTCATGGCC
TTTTATTGC-
 G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTTCATGGCC---
NAATTTTATTACCNNN
 A C G T A C G T A C G T G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTTCATGGCC
TGATTTATGGCC
 A C G T A C G T G T A C A C G T A G C T G T A C C G T A A C G T A C T G A C T G A G T C T G A C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C