Information for 16-GTCAGGTTAAAAA (Motif 28)

A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C G T C T A G C T G A A G T C
p-value:1e-8
log p-value:-2.006e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.8 +/- 21.0bp
Average Position of motif in Background46.3 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTCAGGTTAAAAA
--CGGTTTCAAA-
 A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GTCAGGTTAAAAA
----NATTCAAAT
 A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTCAGGTTAAAAA----
----GGTTAAACATTAA
 A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTCAGGTTAAAAA
-TRAGGTCA----
 A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTCAGGTTAAAAA----
-TAAGGTAATAAAATTA
 A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTCAGGTTAAAAA----
TGATTGTTAACAGTTGG
 A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTCAGGTTAAAAA
GKVTCADRTTWC---
 A C G T A C G T A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGGTTAAAAA---
NNNTTAGTTAACTNANN
 A C G T A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGGTTAAAAA--
WNAGTCADAVTGAAACTN
 A C G T A C G T A C G T A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

Rarg/MA0859.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTCAGGTTAAAAA-----
--AAGGTCAAAAGGTCAA
 A C T G A G C T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A