Information for 23-TMARATAMTGWAT (Motif 42)

A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T
Reverse Opposite:
G T C A A C G T C G T A A G T C C G T A A C T G A C G T C G T A A C G T A G C T A C G T A C T G C G T A
p-value:1e-7
log p-value:-1.693e+01
Information Content per bp:1.872
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 17.1bp
Average Position of motif in Background55.7 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TMARATAMTGWAT-----
--NNNTATTGAATTGNNN
 A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PH0019.1_Dbx2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TMARATAMTGWAT--
TTTAATTAATTAATTC
 A C G T A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T
A C G T C A G T G A C T G T C A C G T A G C A T G A C T C G T A C G T A C G A T C A G T C T G A C G T A A C G T G C A T G T A C

Lhx3/MA0135.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TMARATAMTGWAT--
--GATTAATTAATTT
 A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T
A C G T A C G T T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TMARATAMTGWAT----
------AATGTATCAAT
 A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TMARATAMTGWAT---
--AAAAAATCAATAAT
 A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TMARATAMTGWAT
--AGATAASR---
 A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T
A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A A C G T A C G T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TMARATAMTGWAT--
CATACAATACGAAATAA
 A C G T A C G T A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

Hoxd8/MA0910.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TMARATAMTGWAT-----
-TAAATAATTAATGGCTA
 A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

PH0080.1_Hoxd8/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TMARATAMTGWAT-----
-TAAATAATTAATGGCTA
 A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TMARATAMTGWAT--
CNNNGCTACTGTANNN
 A C G T A C G T G T A C C G T A C T G A C G T A C G A T C G T A G T A C C G A T A C T G C G A T C G T A A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T