Information for 2-AAGAGGGGTTTTCAGT (Motif 4)

C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
Reverse Opposite:
G T C A G A T C C G A T A T C G G T C A T C G A C G T A G C T A G T A C A G T C A G T C A G T C C A G T A G T C A C G T G C A T
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.704
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.1 +/- 25.6bp
Average Position of motif in Background48.7 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---AAGAGGGGTTTTCAGT
NTCAAGTGGN---------
 A C G T A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:2
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGGGGTTTTCAGT
AATTTCAAGTGGCTTN------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.49
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGGGGTTTTCAGT
NTNNTTAAGTGGNTNAN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--AAGAGGGGTTTTCAGT
TTAAGTGGN---------
 A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AAGAGGGGTTTTCAGT
NTCAAGTGG----------
 A C G T A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.48
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGGGGTTTTCAGT
NTNNTTAAGTGGTTANN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---AAGAGGGGTTTTCAGT
BTBRAGTGSN---------
 A C G T A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--AAGAGGGGTTTTCAGT
TTAAGTGGT---------
 A C G T A C G T C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.48
Offset:4
Orientation:forward strand
Alignment:AAGAGGGGTTTTCAGT
----GGGGATTTCC--
 C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:AAGAGGGGTTTTCAGT
------TGGTTTCAGT
 C G T A C G T A A C T G G T C A C T A G T A C G T C A G C A T G C G A T C G A T A C G T A C G T A T G C C G T A C A T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T