Information for 4-GGGAAKAATTWGC (Motif 10)

A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C
Reverse Opposite:
T A C G T A G C G C A T C G T A C G T A A G C T A C G T T G A C A G C T A G C T A G T C G T A C G T A C
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.623
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.6 +/- 13.9bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GGGAAKAATTWGC
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GGGAAKAATTWGC
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GGGAAKAATTWGC
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGGAAKAATTWGC-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGGAAKAATTWGC-
TTTAGAACAATAAAAT
 A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGGAAKAATTWGC
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGGAAKAATTWGC
---AATAATT---
 A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GGGAAKAATTWGC
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGGAAKAATTWGC-
TTAAGAACAATAAATT
 A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGGAAKAATTWGC--
TAGTGAACAATAGATTT
 A C G T A C G T A C T G C A T G T C A G C T G A T C G A A C T G T G C A T C G A C G A T G A C T C G T A A T C G A T G C A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T