Information for 19-CCTGCTCGTC (Motif 20)

A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
Reverse Opposite:
A C T G C G T A A T G C A C T G C G T A A C T G A G T C G T C A A C T G A C T G
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.863
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 23.3bp
Average Position of motif in Background22.2 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTCGTC
SNGCACCTGCHS---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCGTC
CCCCCTGCTGTG-
 A C G T A C G T A C G T A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTGCTCGTC
CCTGCTGAGH
 A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTCGTC
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGCTCGTC
--NGCTN---
 A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCGTC--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTGCTCGTC
ACATCCTGNT----
 A C G T A C G T A C G T A C G T A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCGTC
NCACCTGTN----
 A C G T A C G T A C G T A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCGTC--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTGCTCGTC
CCAGCTGTTN
 A G T C A G T C C A G T A C T G A G T C A C G T T G A C T A C G C G A T A G T C
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A