Information for 20-AGGYCAMSGTGWC (Motif 27)

C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G G C A T A G T C C G T A T A G C A T C G A C G T A C G T C T A G C T G A G T A C G T A C C G A T
p-value:1e-8
log p-value:-1.958e+01
Information Content per bp:1.724
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif39.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets60.7 +/- 23.2bp
Average Position of motif in Background50.6 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-AGGYCAMSGTGWC-
NAGGTCACNNTGACC
 A C G T C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR1/MA0112.3/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-AGGYCAMSGTGWC---
CAGGTCACCGTGACCTT
 A C G T C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C A C G T A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:AGGYCAMSGTGWC--
AGGNCANNGTGACCT
 C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C A C G T A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGGYCAMSGTGWC-----
GTAGGTCACGGTGACCTACT
 A C G T A C G T C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGYCAMSGTGWC
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGYCAMSGTGWC-
GTAGGTCACTGGGTCA
 A C G T A C G T C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGYCAMSGTGWC
AGGTCAAGGTCA-
 C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGYCAMSGTGWC
AAGGTCAC------
 A C G T C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGYCAMSGTGWC
AGGTCAAGGTCA-
 C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGYCAMSGTGWC
AGGTCA-------
 C G T A A C T G A C T G A G C T A G T C C G T A T G C A A T G C A T C G A C G T A C T G C G T A A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T