Information for 17-AAGTCAGGCAGAC (Motif 24)

C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A C T G G T A C A G T C A C G T A C T G C G T A A G T C C G A T A G C T
p-value:1e-9
log p-value:-2.159e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets29.8 +/- 25.6bp
Average Position of motif in Background36.5 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGTCAGGCAGAC
AAAAGTCAA------
 A C G T A C G T C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGTCAGGCAGAC--
AGGTCACCCTGACCT
 C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAGTCAGGCAGAC-
NAGGTCACNNTGACC
 A C G T C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:AAGTCAGGCAGAC----
-------CCAGACRSVB
 C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AAGTCAGGCAGAC--
-------CCAGACAG
 C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGTCAGGCAGAC
-AGTCACGC----
 C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AAGTCAGGCAGAC--
-------BCAGACWA
 C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

ESR1/MA0112.3/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AAGTCAGGCAGAC---
CAGGTCACCGTGACCTT
 A C G T C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C A C G T A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AAGTCAGGCAGAC-----
---SCAGYCADGCATGAC
 C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AAGTCAGGCAGAC
ACGTCA-------
 C T G A C G T A C T A G A C G T A G T C C G T A A C T G A C T G A G T C C G T A C T A G C G T A A G T C
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T