Information for 11-AGCAATCTGAAAT (Motif 11)

C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T G T A C C G T A C T A G C G T A A C G T A C G T A C T G A G T C C G A T
p-value:1e-11
log p-value:-2.675e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 19.9bp
Average Position of motif in Background66.9 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGCAATCTGAAAT
-GWAAYHTGAKMC
 C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAATCTGAAAT
-GWAAYHTGABMC
 C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGCAATCTGAAAT
AACAAT-------
 C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGCAATCTGAAAT-
--GAAAGTGAAAGT
 C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T A C G T
A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGCAATCTGAAAT
NAACAAT-------
 A C G T C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGCAATCTGAAAT-
--GAAACTGAAACT
 C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T A C G T
A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGCAATCTGAAAT
--CGGTTTCAAA-
 C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCAATCTGAAAT
GTAAACAAT-------
 A C G T A C G T A C G T C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGCAATCTGAAAT--
WNAGTCADAVTGAAACTN
 A C G T A C G T A C G T C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

ETV2/MA0762.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGCAATCTGAAAT-
---AACCGGAAATA
 C G T A C T A G A G T C G T C A C G T A C G A T A G T C A C G T A C T G C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T C T G A T C G A T A G C T G A C A C T G A C T G C G T A G C T A T C G A A G C T C T G A