Information for 3-TTGCCCTGAC (Motif 8)

A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C
Reverse Opposite:
A T C G C A G T A G T C C G T A A C T G C T A G T A C G A G T C T G C A T C G A
p-value:1e-9
log p-value:-2.080e+01
Information Content per bp:1.666
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif11.45%
Number of Background Sequences with motif2264.8
Percentage of Background Sequences with motif4.66%
Average Position of motif in Targets44.7 +/- 28.4bp
Average Position of motif in Background50.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTGCCCTGAC
CTGCCCGCA-
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTGCCCTGAC-
-TGCCCAGNHW
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C A C G T
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTGCCCTGAC
-TGACCTYA-
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTGCCCTGAC--
ATGCCCTGAGGC
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C A C G T A C G T
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTGCCCTGAC--
TGACCTTGACCT
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C A C G T A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TTGCCCTGAC--
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C G T A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTGCCCTGAC-
---NCGTGACN
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C A C G T
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGCCCTGAC--
TGACCTTGACCT
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C A C G T A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTGCCCTGAC
ATGCCCACC-
 A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTGCCCTGAC--
NGTTGCCATGGCAA
 A C G T A C G T A G C T A C G T T C A G A T G C G A T C T G A C G C A T T C A G G T C A T A G C A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A