Information for 7-AGGTCACTGCAGG (Motif 10)

C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G
Reverse Opposite:
A G T C A G T C A C G T C T A G A G T C C G T A A C T G A C G T A T C G C G T A A G T C A G T C A C G T
p-value:1e-8
log p-value:-1.890e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 16.1bp
Average Position of motif in Background66.4 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCACTGCAGG---
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGTCACTGCAGG
AAGGTCAC------
 A C G T C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGTCACTGCAGG---
GGGTTACTANAGGTCA
 C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGTCACTGCAGG---
AATCGCACTGCATTCCG
 A C G T C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACTGCAGG
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTCACTGCAGG
AGGTCA-------
 C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCACTGCAGG
TCAAGGTCAN------
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:AGGTCACTGCAGG---
----CACAGCAGGGGG
 C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGGTCACTGCAGG
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGTCACTGCAGG---
AAGGTCACGAAAGGTCA
 A C G T C G T A A C T G A C T G A C G T A T G C C G T A A G T C C G A T A C T G A G T C C G T A A C T G C T A G A C G T A C G T A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A