Information for 13-GAGTGACAGYCASGTG (Motif 17)

A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G
Reverse Opposite:
A G T C C G T A A G T C A T G C A G C T C T A G T C A G A G T C A C G T A C T G A G C T A G T C G T C A A T G C A C G T A T G C
p-value:1e-11
log p-value:-2.712e+01
Information Content per bp:1.834
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.7 +/- 24.2bp
Average Position of motif in Background41.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGACAGYCASGTG
TGAGTGACAGSC-----
 A C G T A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGACAGYCASGTG
NTGATTGACAGN------
 A C G T A C G T A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGACAGYCASGTG
BTGABTGACAGS------
 A C G T A C G T A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGTGACAGYCASGTG
AGGTGHCAGACA----
 A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:5
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GAGTGACAGYCASGTG-
--------GCCACGTGT
 A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAGTGACAGYCASGTG
-VBTGWCAGCB-----
 A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GAGTGACAGYCASGTG-
-------GGTCACGTGA
 A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

TFE3/MA0831.1/Jaspar

Match Rank:8
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:GAGTGACAGYCASGTG--
--------GTCACGTGNT
 A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T T G A C C G T A A G T C T C A G C G A T A T C G T C G A A G C T

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GAGTGACAGYCASGTG-
-------GGTCACGTGG
 A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G

Arntl/MA0603.1/Jaspar

Match Rank:10
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GAGTGACAGYCASGTG-
-------GGTCACGTGC
 A T C G C G T A A T C G A C G T A C T G C T G A A G T C G T C A A C T G A G T C A G T C C T G A T A C G A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C