Information for 11-GGTCAAGATT (Motif 12)

A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G T C A C G T A C G T A C T G C G T A A G T C A T G C
p-value:1e-7
log p-value:-1.658e+01
Information Content per bp:1.962
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.2 +/- 22.2bp
Average Position of motif in Background51.4 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGTCAAGATT
---CAAGCTT
 A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAGATT-
AGGTCAAGGTCA
 A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAGATT
AGGTCA-----
 A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGTCAAGATT
AGRGGTCA-----
 A C G T A C G T A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAGATT-
AGGTCAAGGTCA
 A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGTCAAGATT
CAAAGGTCAAGGG-
 A C G T A C G T A C G T A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------GGTCAAGATT
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------GGTCAAGATT
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGTCAAGATT
TRAGGTCA-----
 A C G T A C G T A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGTCAAGATT
ATCAAGGTCA-----
 A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T