Information for 4-AATTTACATT (Motif 5)

G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T
Reverse Opposite:
T G C A C T G A A C G T A T C G G C A T T G C A G C T A G T C A A C G T C A G T
p-value:1e-10
log p-value:-2.454e+01
Information Content per bp:1.655
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif6.54%
Number of Background Sequences with motif1069.3
Percentage of Background Sequences with motif2.26%
Average Position of motif in Targets52.2 +/- 30.8bp
Average Position of motif in Background49.6 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AATTTACATT
BTVATTWGCATA
 A C G T A C G T G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU3F1/MA0786.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AATTTACATT-
TAATTTGCATAA
 A C G T G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T A C G T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AATTTACATT-
TTCATTTGCATAT
 A C G T A C G T G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AATTTACATT
CTCATTTGCATW
 A C G T A C G T G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AATTTACATT
-ATTTGCATA
 G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AATTTACATT-
-ATTTGCATAA
 G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T A C G T
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AATTTACATT-
TAATTTGCATAA
 A C G T G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T A C G T
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---AATTTACATT---
TNTAATTTGCATANNN
 A C G T A C G T A C G T G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AATTTACATT--
AATTTGCATANT
 G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T A C G T A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

POU3F3/MA0788.1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AATTTACATT--
AAATTAGCATAAT
 A C G T G T C A T G C A C A G T C G A T A C G T C G T A T A G C T G C A G A C T A C G T A C G T A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T