Information for 5-RGAGGGCGCTSTCTGC (Motif 4)

C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
Reverse Opposite:
A T C G A T G C G T C A T C A G C G T A A T C G C T G A A C T G G T A C A T C G A G T C A G T C A G T C A G C T A G T C G A T C
p-value:1e-18
log p-value:-4.233e+01
Information Content per bp:1.782
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.6 +/- 21.3bp
Average Position of motif in Background19.7 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RGAGGGCGCTSTCTGC
TTGGGGGCGCCCCTAG-
 A C G T C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:RGAGGGCGCTSTCTGC
----GGCGCGCT----
 C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----RGAGGGCGCTSTCTGC
NNNAAGGGGGCGGGNNN---
 A C G T A C G T A C G T A C G T C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:RGAGGGCGCTSTCTGC
ANCGCGCGCCCTTNN-
 C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------RGAGGGCGCTSTCTGC
GCCASCAGGGGGCGCYVNNG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:RGAGGGCGCTSTCTGC
------VBSYGTCTGG
 C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:8
Orientation:forward strand
Alignment:RGAGGGCGCTSTCTGC
--------CTGTCTGG
 C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RGAGGGCGCTSTCTGC
NTCGCGCGCCTTNNN-
 C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-RGAGGGCGCTSTCTGC
NRRGGGTCTT-------
 A C G T C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.52
Offset:-8
Orientation:reverse strand
Alignment:--------RGAGGGCGCTSTCTGC
TGGCCACCAGGTGGCACTNT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G C T G A A C T G A C T G A C T G A T G C A C T G G T A C A G C T A T C G A C G T A G T C A C G T A T C G A T G C
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T A C G T A C G T