Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-120 | -2.785e+02 | 0.0000 | 131.0 | 15.43% | 364.1 | 0.79% | motif file (matrix) |
svg |
2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-81 | -1.888e+02 | 0.0000 | 123.0 | 14.49% | 639.2 | 1.38% | motif file (matrix) |
svg |
3 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-34 | -7.903e+01 | 0.0000 | 125.0 | 14.72% | 1873.5 | 4.05% | motif file (matrix) |
svg |
4 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-33 | -7.602e+01 | 0.0000 | 202.0 | 23.79% | 4439.2 | 9.59% | motif file (matrix) |
svg |
5 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-32 | -7.501e+01 | 0.0000 | 134.0 | 15.78% | 2218.7 | 4.79% | motif file (matrix) |
svg |
6 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-31 | -7.235e+01 | 0.0000 | 115.0 | 13.55% | 1726.4 | 3.73% | motif file (matrix) |
svg |
7 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-31 | -7.195e+01 | 0.0000 | 216.0 | 25.44% | 5096.3 | 11.01% | motif file (matrix) |
svg |
8 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-31 | -7.160e+01 | 0.0000 | 159.0 | 18.73% | 3090.2 | 6.68% | motif file (matrix) |
svg |
9 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-29 | -6.737e+01 | 0.0000 | 109.0 | 12.84% | 1658.8 | 3.58% | motif file (matrix) |
svg |
10 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-27 | -6.424e+01 | 0.0000 | 97.0 | 11.43% | 1389.7 | 3.00% | motif file (matrix) |
svg |
11 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-26 | -6.015e+01 | 0.0000 | 71.0 | 8.36% | 803.7 | 1.74% | motif file (matrix) |
svg |
12 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-25 | -5.801e+01 | 0.0000 | 78.0 | 9.19% | 1004.3 | 2.17% | motif file (matrix) |
svg |
13 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-25 | -5.798e+01 | 0.0000 | 71.0 | 8.36% | 834.6 | 1.80% | motif file (matrix) |
svg |
14 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-24 | -5.749e+01 | 0.0000 | 99.0 | 11.66% | 1581.6 | 3.42% | motif file (matrix) |
svg |
15 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-24 | -5.698e+01 | 0.0000 | 56.0 | 6.60% | 517.1 | 1.12% | motif file (matrix) |
svg |
16 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-24 | -5.598e+01 | 0.0000 | 84.0 | 9.89% | 1195.5 | 2.58% | motif file (matrix) |
svg |
17 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-23 | -5.441e+01 | 0.0000 | 74.0 | 8.72% | 964.0 | 2.08% | motif file (matrix) |
svg |
18 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-23 | -5.355e+01 | 0.0000 | 64.0 | 7.54% | 734.0 | 1.59% | motif file (matrix) |
svg |
19 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-22 | -5.227e+01 | 0.0000 | 45.0 | 5.30% | 354.0 | 0.76% | motif file (matrix) |
svg |
20 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-19 | -4.557e+01 | 0.0000 | 70.0 | 8.24% | 1017.2 | 2.20% | motif file (matrix) |
svg |
21 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-14 | -3.326e+01 | 0.0000 | 53.0 | 6.24% | 799.9 | 1.73% | motif file (matrix) |
svg |
22 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-12 | -2.979e+01 | 0.0000 | 54.0 | 6.36% | 903.2 | 1.95% | motif file (matrix) |
svg |
23 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-12 | -2.822e+01 | 0.0000 | 58.0 | 6.83% | 1062.2 | 2.29% | motif file (matrix) |
svg |
24 |
| GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-11 | -2.757e+01 | 0.0000 | 38.0 | 4.48% | 510.8 | 1.10% | motif file (matrix) |
svg |
25 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-11 | -2.725e+01 | 0.0000 | 90.0 | 10.60% | 2177.3 | 4.70% | motif file (matrix) |
svg |
26 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-11 | -2.657e+01 | 0.0000 | 224.0 | 26.38% | 7834.0 | 16.92% | motif file (matrix) |
svg |
27 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-11 | -2.599e+01 | 0.0000 | 61.0 | 7.18% | 1220.3 | 2.64% | motif file (matrix) |
svg |
28 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-11 | -2.583e+01 | 0.0000 | 29.0 | 3.42% | 321.5 | 0.69% | motif file (matrix) |
svg |
29 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-9 | -2.267e+01 | 0.0000 | 27.0 | 3.18% | 320.2 | 0.69% | motif file (matrix) |
svg |
30 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-9 | -2.225e+01 | 0.0000 | 122.0 | 14.37% | 3677.8 | 7.94% | motif file (matrix) |
svg |
31 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-9 | -2.163e+01 | 0.0000 | 10.0 | 1.18% | 30.2 | 0.07% | motif file (matrix) |
svg |
32 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-9 | -2.096e+01 | 0.0000 | 256.0 | 30.15% | 9841.0 | 21.26% | motif file (matrix) |
svg |
33 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-8 | -1.985e+01 | 0.0000 | 49.0 | 5.77% | 1020.3 | 2.20% | motif file (matrix) |
svg |
34 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-7 | -1.715e+01 | 0.0000 | 200.0 | 23.56% | 7556.3 | 16.32% | motif file (matrix) |
svg |
35 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-6 | -1.607e+01 | 0.0000 | 65.0 | 7.66% | 1746.7 | 3.77% | motif file (matrix) |
svg |
36 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.543e+01 | 0.0000 | 12.0 | 1.41% | 91.8 | 0.20% | motif file (matrix) |
svg |
37 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-6 | -1.543e+01 | 0.0000 | 11.0 | 1.30% | 74.2 | 0.16% | motif file (matrix) |
svg |
38 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-6 | -1.445e+01 | 0.0000 | 177.0 | 20.85% | 6751.2 | 14.58% | motif file (matrix) |
svg |
39 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.411e+01 | 0.0000 | 149.0 | 17.55% | 5483.1 | 11.84% | motif file (matrix) |
svg |
40 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-6 | -1.404e+01 | 0.0000 | 118.0 | 13.90% | 4089.7 | 8.83% | motif file (matrix) |
svg |
41 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-5 | -1.381e+01 | 0.0000 | 97.0 | 11.43% | 3191.4 | 6.89% | motif file (matrix) |
svg |
42 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-5 | -1.305e+01 | 0.0000 | 35.0 | 4.12% | 781.9 | 1.69% | motif file (matrix) |
svg |
43 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-5 | -1.255e+01 | 0.0000 | 73.0 | 8.60% | 2267.1 | 4.90% | motif file (matrix) |
svg |
44 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-5 | -1.234e+01 | 0.0000 | 120.0 | 14.13% | 4329.6 | 9.35% | motif file (matrix) |
svg |
45 |
| GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-5 | -1.203e+01 | 0.0000 | 12.0 | 1.41% | 127.6 | 0.28% | motif file (matrix) |
svg |
46 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-5 | -1.175e+01 | 0.0001 | 220.0 | 25.91% | 9146.5 | 19.76% | motif file (matrix) |
svg |
47 |
| Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.130e+01 | 0.0001 | 9.0 | 1.06% | 74.9 | 0.16% | motif file (matrix) |
svg |
48 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-4 | -1.034e+01 | 0.0002 | 23.0 | 2.71% | 471.6 | 1.02% | motif file (matrix) |
svg |
49 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-4 | -1.021e+01 | 0.0003 | 34.0 | 4.00% | 859.0 | 1.86% | motif file (matrix) |
svg |
50 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-4 | -9.796e+00 | 0.0004 | 42.0 | 4.95% | 1183.9 | 2.56% | motif file (matrix) |
svg |
51 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-3 | -8.840e+00 | 0.0010 | 32.0 | 3.77% | 848.8 | 1.83% | motif file (matrix) |
svg |
52 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-3 | -8.798e+00 | 0.0011 | 148.0 | 17.43% | 6033.0 | 13.03% | motif file (matrix) |
svg |
53 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -8.514e+00 | 0.0014 | 143.0 | 16.84% | 5830.4 | 12.59% | motif file (matrix) |
svg |
54 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-3 | -8.466e+00 | 0.0014 | 45.0 | 5.30% | 1382.8 | 2.99% | motif file (matrix) |
svg |
55 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.222e+00 | 0.0018 | 49.0 | 5.77% | 1564.5 | 3.38% | motif file (matrix) |
svg |
56 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-3 | -8.084e+00 | 0.0020 | 32.0 | 3.77% | 886.7 | 1.92% | motif file (matrix) |
svg |
57 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-3 | -7.695e+00 | 0.0029 | 66.0 | 7.77% | 2340.4 | 5.06% | motif file (matrix) |
svg |
58 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -7.544e+00 | 0.0033 | 48.0 | 5.65% | 1571.7 | 3.40% | motif file (matrix) |
svg |
59 |
| KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer | 1e-3 | -7.363e+00 | 0.0039 | 90.0 | 10.60% | 3464.9 | 7.48% | motif file (matrix) |
svg |
60 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-3 | -7.144e+00 | 0.0048 | 90.0 | 10.60% | 3489.4 | 7.54% | motif file (matrix) |
svg |
61 |
| HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-2 | -6.793e+00 | 0.0067 | 34.0 | 4.00% | 1040.6 | 2.25% | motif file (matrix) |
svg |
62 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.791e+00 | 0.0067 | 35.0 | 4.12% | 1081.2 | 2.34% | motif file (matrix) |
svg |
63 |
| p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -6.672e+00 | 0.0073 | 26.0 | 3.06% | 728.4 | 1.57% | motif file (matrix) |
svg |
64 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.616e+00 | 0.0076 | 26.0 | 3.06% | 731.8 | 1.58% | motif file (matrix) |
svg |
65 |
| E-box(bHLH)/Promoter/Homer | 1e-2 | -6.584e+00 | 0.0077 | 13.0 | 1.53% | 262.0 | 0.57% | motif file (matrix) |
svg |
66 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -6.499e+00 | 0.0083 | 33.0 | 3.89% | 1018.4 | 2.20% | motif file (matrix) |
svg |
67 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -6.386e+00 | 0.0092 | 10.0 | 1.18% | 174.1 | 0.38% | motif file (matrix) |
svg |
68 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -6.353e+00 | 0.0093 | 16.0 | 1.88% | 371.5 | 0.80% | motif file (matrix) |
svg |
69 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.296e+00 | 0.0097 | 36.0 | 4.24% | 1156.1 | 2.50% | motif file (matrix) |
svg |
70 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.157e+00 | 0.0110 | 51.0 | 6.01% | 1815.4 | 3.92% | motif file (matrix) |
svg |
71 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-2 | -6.122e+00 | 0.0112 | 100.0 | 11.78% | 4090.9 | 8.84% | motif file (matrix) |
svg |
72 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-2 | -6.106e+00 | 0.0113 | 59.0 | 6.95% | 2178.1 | 4.71% | motif file (matrix) |
svg |
73 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -5.721e+00 | 0.0163 | 82.0 | 9.66% | 3287.7 | 7.10% | motif file (matrix) |
svg |
74 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-2 | -5.646e+00 | 0.0174 | 37.0 | 4.36% | 1247.0 | 2.69% | motif file (matrix) |
svg |
75 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-2 | -5.547e+00 | 0.0189 | 23.0 | 2.71% | 672.6 | 1.45% | motif file (matrix) |
svg |
76 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.528e+00 | 0.0190 | 128.0 | 15.08% | 5543.7 | 11.98% | motif file (matrix) |
svg |
77 |
| ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.366e+00 | 0.0221 | 4.0 | 0.47% | 36.8 | 0.08% | motif file (matrix) |
svg |
78 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -5.331e+00 | 0.0226 | 89.0 | 10.48% | 3673.2 | 7.93% | motif file (matrix) |
svg |
79 |
| ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.232e+00 | 0.0246 | 20.0 | 2.36% | 571.1 | 1.23% | motif file (matrix) |
svg |
80 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.199e+00 | 0.0251 | 51.0 | 6.01% | 1908.1 | 4.12% | motif file (matrix) |
svg |
81 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-2 | -5.117e+00 | 0.0269 | 21.0 | 2.47% | 617.1 | 1.33% | motif file (matrix) |
svg |
82 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -5.082e+00 | 0.0276 | 109.0 | 12.84% | 4682.9 | 10.12% | motif file (matrix) |
svg |
83 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -5.077e+00 | 0.0276 | 13.0 | 1.53% | 314.1 | 0.68% | motif file (matrix) |
svg |
84 |
| Sp1(Zf)/Promoter/Homer | 1e-2 | -4.943e+00 | 0.0309 | 29.0 | 3.42% | 959.2 | 2.07% | motif file (matrix) |
svg |
85 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-2 | -4.896e+00 | 0.0320 | 133.0 | 15.67% | 5903.8 | 12.75% | motif file (matrix) |
svg |
86 |
| NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-2 | -4.855e+00 | 0.0330 | 9.0 | 1.06% | 184.7 | 0.40% | motif file (matrix) |
svg |
87 |
| Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-2 | -4.832e+00 | 0.0333 | 13.0 | 1.53% | 324.9 | 0.70% | motif file (matrix) |
svg |
88 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-2 | -4.625e+00 | 0.0405 | 217.0 | 25.56% | 10244.8 | 22.13% | motif file (matrix) |
svg |
89 |
| Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.613e+00 | 0.0406 | 31.0 | 3.65% | 1071.6 | 2.31% | motif file (matrix) |
svg |