Information for 10-GGAGAGATCACWA (Motif 20)

A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A
Reverse Opposite:
A G C T C G A T A C T G A C G T A C T G C G T A A C G T A G T C A C G T A G T C A C G T A G T C A G T C
p-value:1e-5
log p-value:-1.226e+01
Information Content per bp:1.941
Number of Target Sequences with motif268.0
Percentage of Target Sequences with motif31.90%
Number of Background Sequences with motif11971.6
Percentage of Background Sequences with motif25.05%
Average Position of motif in Targets51.5 +/- 26.0bp
Average Position of motif in Background50.0 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGATCACWA--
AAGGCGAAATCATCGCA
 A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGAGAGATCACWA
---AAGGTCAC--
 A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGAGAGATCACWA-
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGAGAGATCACWA
--AGRGGTCA---
 A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGATCACWA-----
AADGAGVCANYASTACAGNC
 A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGATCACWA
ANGNAAAGGTCA---
 A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGATCACWA-
TCTCAAAGGTCACCTG
 A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Tcf7/MA0769.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGAGAGATCACWA-
--AAAGATCAAAGG
 A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A A C G T
A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGAGAGATCACWA----
--AAAGATCAAAGGGTT
 A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGATCACWA--
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C T G A A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C