Information for 14-GCAGGTCAGC (Motif 16)

T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
Reverse Opposite:
A C T G T A G C C G A T A C T G T G C A A G T C T A G C C A G T A T C G A G T C
p-value:1e-8
log p-value:-2.018e+01
Information Content per bp:1.659
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.07%
Number of Background Sequences with motif1122.7
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets49.1 +/- 27.7bp
Average Position of motif in Background52.0 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GCAGGTCAGC
--AGGTCA--
 T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCAGGTCAGC
TRAGGTCA--
 T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GCAGGTCAGC
ATCAAGGTCA--
 A C G T A C G T T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCAGGTCAGC
-AAGGTCAC-
 T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCAGGTCAGC
AGRGGTCA--
 T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:GCAGGTCAGC-----
----GTCAGCANNTN
 T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCAGGTCAGC
-CAGGTGAGG
 T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCAGGTCAGC-------
--AGGTCACCCTGACCT
 T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTCAGC
TCAAGGTCAN-
 A C G T T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

XBP1/MA0844.1/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCAGGTCAGC
AATGCCACGTCATC
 A C G T A C G T A C G T A C G T T C A G T A G C G T C A A T C G T C A G A C G T T G A C G C T A A T C G T G A C
C G T A C T G A A C G T C A T G G T A C A G T C C T G A G A T C C T A G A G C T T G A C C T G A A C G T A G T C