Information for 4-GTTGTGAAATTTA (Motif 6)

C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A
Reverse Opposite:
A C G T C T G A C G T A C G T A C G A T A C G T A C G T G T A C C G T A A T G C G T C A C G T A A G T C
p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.797
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.2 +/- 21.2bp
Average Position of motif in Background56.9 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0171.1_Sox18_2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTTGTGAAATTTA----
-NNNNTGAATTCANNNC
 C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

CEBPA/MA0102.3/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTTGTGAAATTTA
NATTGTGCAAT---
 A C G T C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A
C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GTTGTGAAATTTA-------
----TNAATTTTATTACCTN
 C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GTTGTGAAATTTA-------
------ACATTCATGACACG
 C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GTTGTGAAATTTA---
----TGACCTTTNCNT
 C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GTTGTGAAATTTA-----
------DGWTTTATGRCN
 C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTTGTGAAATTTA
GTTGCGCAAT---
 C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A
T C A G A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A C G T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTTGTGAAATTTA
GGTCGTAAAATT--
 A C G T C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GTTGTGAAATTTA
GAAAAGGTGTGAAAATT-
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GTTGTGAAATTTA--------
-----NAATTTTATTACCNNN
 C T A G A C G T A C G T A T C G C G A T A C T G C G T A G T C A C G T A A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T