Information for 3-CCTCTAGTGBCCA (Motif 5)

A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
Reverse Opposite:
C G A T C T A G A C T G T A G C G T A C C G T A A G T C A G C T C G T A A C T G T G C A A C T G A C T G
p-value:1e-14
log p-value:-3.247e+01
Information Content per bp:1.861
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets25.1 +/- 18.2bp
Average Position of motif in Background66.5 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------CCTCTAGTGBCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTAGTGBCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.64
Offset:-9
Orientation:forward strand
Alignment:---------CCTCTAGTGBCCA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTAGTGBCCA
TGWCCTCARNTGACC-
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTAGTGBCCA-
TGACCTTTCGTGACCTT
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTAGTGBCCA-
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTAGTGBCCA
TGACCTNTAGTAACCC
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTCTAGTGBCCA
-NTCAAGTGG---
 A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTCTAGTGBCCA---
TGACCTAAAGTAACCTCTG
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCTCTAGTGBCCA
-CTYRAGTGSY--
 A G T C A G T C A C G T A G T C A C G T C T G A C T A G A C G T A C T G A T C G G T A C A G T C C G T A
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T