Information for 4-TGCACAVAGGTTA (Motif 3)

A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
Reverse Opposite:
A G C T G T C A G T C A A G T C A G T C A C G T A C G T A C G T A C T G A C G T A T C G A G T C G T C A
p-value:1e-12
log p-value:-2.791e+01
Information Content per bp:1.802
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.3 +/- 22.7bp
Average Position of motif in Background56.2 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TGCACAVAGGTTA
--AACAAAGG---
 A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGCACAVAGGTTA
AAAACAAAGG---
 A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCACAVAGGTTA
GGAACAAAGR---
 A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCACAVAGGTTA
VRRACAAWGG---
 A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGCACAVAGGTTA
--RACAAWGG---
 A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TGCACAVAGGTTA
---ACAAAG----
 A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGCACAVAGGTTA----
-TCGCGAAGGTTGTACT
 A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCACAVAGGTTA
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCACAVAGGTTA
TGGGGCAAAGGTCA
 A C G T A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGCACAVAGGTTA
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T C T A G A T G C C G T A A G T C C G T A T G C A C G T A A C T G A C T G A C G T A C G T C T G A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T