Information for 11-CTTGGATTGW (Motif 29)

T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A
Reverse Opposite:
G C A T A G T C C G T A C G T A A C G T A G T C A G T C C G T A C G T A A C T G
p-value:1e-4
log p-value:-1.146e+01
Information Content per bp:1.813
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif70.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets61.1 +/- 24.7bp
Average Position of motif in Background54.1 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CTTGGATTGW--
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C G T T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CTTGGATTGW
--GGGATTAA
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTTGGATTGW---
-TTTGATTGATGN
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A A C G T A C G T A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTTGGATTGW-
--GGGATTANN
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTTGGATTGW
--TTGATTGN
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTTGGATTGW
--NGGATTAA
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTTGGATTGW-
---GGATTAGC
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTTGGATTGW
--RGGATTAR
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTTGGATTGW-
-VRGGATTARN
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTTGGATTGW
-NGGGATTA-
 T A G C A C G T C G A T A C T G C T A G C G T A A C G T A C G T C T A G C G T A
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T