Information for 16-TRTGCATYAATTT (Motif 24)

A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T
Reverse Opposite:
C T G A C G T A C G T A C G A T A C G T C T A G C G T A C G A T C T A G A T G C C G T A A G C T C T G A
p-value:1e-6
log p-value:-1.502e+01
Information Content per bp:1.759
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets41.5 +/- 28.4bp
Average Position of motif in Background46.6 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TRTGCATYAATTT---
TCACCCATCAATAAACA
 A C G T A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TRTGCATYAATTT
TNNATTATGCATANNTT-
 A C G T A C G T A C G T A C G T A C G T A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TRTGCATYAATTT
GHATATKCAT------
 A C G T A C G T A C G T A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TRTGCATYAATTT
AATGTATCAAT--
 A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TRTGCATYAATTT-
NNCATTCATTCATNNN
 A C G T A C G T A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TRTGCATYAATTT--
ACATCTGGWWTYAATTAR
 A C G T A C G T A C G T A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T A C G T A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TRTGCATYAATTT
GAATATTCAT------
 A C G T A C G T A C G T A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0090.1_Lbx2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TRTGCATYAATTT------
--TGCATTAATTAATGCGA
 A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A C G G T A C G T C A G A C T G A C T C G T A T C G A A G C T C G A T C T G A C T G A A G C T A C T G T A G C C T A G T C G A

PH0110.1_Nkx1-2/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TRTGCATYAATTT------
--TGNACTAATTAGTGNAN
 A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A C G G A T C T G C A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A G C T A C T G T G A C G T C A G T A C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TRTGCATYAATTT--
---GKMTCADRTTWC
 A G C T C T G A A C G T A T C G A G T C C G T A A C G T A G T C G T C A C G T A G A C T C G A T A G C T A C G T A C G T
A C G T A C G T A C G T C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C