Information for 9-ARCCCTWAARCAS (Motif 13)

C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
Reverse Opposite:
T A C G A C G T A C T G A G T C A C G T A C G T C G T A C G T A A C T G A C T G C T A G A G C T A C G T
p-value:1e-9
log p-value:-2.256e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.2 +/- 19.8bp
Average Position of motif in Background50.0 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYBL2/MA0777.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ARCCCTWAARCAS--
AACCGTTAAACGGTC
 C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C A C G T A C G T
C T G A C T G A T G A C T A G C C T A G C A G T A G C T C G T A T G C A G C T A T G A C A T C G A T C G G A C T G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ARCCCTWAARCAS
GGCCATAAATCA-
 C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ARCCCTWAARCAS
-GCCATAAATCA-
 C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ARCCCTWAARCAS
GGCCATAAATCA-
 C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ARCCCTWAARCAS
NGYCATAAAWCH-
 C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ARCCCTWAARCAS
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ARCCCTWAARCAS
GGCCATAAATCAC
 C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ARCCCTWAARCAS
AAACMATTAN----
 A C G T C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ARCCCTWAARCAS
AASCACTCAA----
 A C G T C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ARCCCTWAARCAS
--TCATCAATCA-
 C G T A C T G A A G T C A G T C A G T C A C G T C G A T C G T A C G T A C T A G A G T C C G T A A T G C
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T