Information for 8-TTMACASWCWATT (Motif 12)

A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G A T A C T G C G T A A T C G A C G T A C T G A C G T A C G T C G T A C G T A
p-value:1e-9
log p-value:-2.256e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.6 +/- 15.3bp
Average Position of motif in Background30.3 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTMACASWCWATT
TTMACACCTT---
 A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T
C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTMACASWCWATT-----
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TTMACASWCWATT
TGATTGTTAACAGTTGG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTMACASWCWATT
ATTAACACCT----
 A C G T A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TTMACASWCWATT-----
--AACAACCAATTAATTC
 A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTMACASWCWATT
NNTTTTCACACCTTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTMACASWCWATT
TTTCACACCTN---
 A C G T A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTMACASWCWATT-----
--AAAAACCAATTAAGAA
 A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTMACASWCWATT-
ATTTGCATACAATGG
 A C G T A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTMACASWCWATT-----
-TNCNNAACAATTTTTNC
 A C G T A C G T G T C A C G T A A G T C C G T A A T G C C G A T A G T C G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C