Information for 6-TGTTGGCAAC (Motif 8)

A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
Reverse Opposite:
A C T G A C G T C G A T A C T G G A T C A G T C G T C A G C T A G T A C C T G A
p-value:1e-10
log p-value:-2.354e+01
Information Content per bp:1.813
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif63.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets38.4 +/- 24.7bp
Average Position of motif in Background51.5 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGTTGGCAAC
NNTTGGCANN
 A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TGTTGGCAAC
-CTTGGCAA-
 A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TGTTGGCAAC
-NTTGGCANN
 A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGTTGGCAAC
--TTGGCA--
 A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGTTGGCAAC
GGTTGGCAT-
 A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGTTGGCAAC
GGTGYTGACAGS
 A C G T A C G T A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGTTGGCAAC--
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTTGGCAAC--
SCCTAGCAACAG
 A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGTTGGCAAC---
TACCATAGCAACGGT
 A C G T A C G T A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGTTGGCAAC
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G C T A C T G C G A T A C G T C T A G C T A G G T A C G C T A G T C A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C