Information for 3-GACCTAAACT (Motif 20)

A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T
Reverse Opposite:
C T G A A T C G C A G T C A G T A C G T C G T A C T A G C A T G G A C T A G T C
p-value:1e-9
log p-value:-2.134e+01
Information Content per bp:1.766
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif135.4
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets58.2 +/- 19.2bp
Average Position of motif in Background52.0 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0036.1_Irf6_1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GACCTAAACT-----
CTGATCGAAACCAAAGT
 A C G T A C G T A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

PB0035.1_Irf5_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GACCTAAACT--
ATAAACCGAAACCAA
 A C G T A C G T A C G T A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T
C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GACCTAAACT--
TTGACCTANTTATN
 A C G T A C G T A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GACCTAAACT---
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GACCTAAACT--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GACCTAAACT---
--AATAAACAATN
 A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T A C G T
A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

BARHL2/MA0635.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GACCTAAACT--
--GCTAAACGGT
 A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GACCTAAACT
--GCTAATCC
 A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

PB0034.1_Irf4_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GACCTAAACT---
CGTATCGAAACCAAA
 A C G T A C G T A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GACCTAAACT--
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T A C T G C T G A G T A C G A T C A C G T C G T A G T C A G T C A A T G C A G C T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G