Information for 10-AGACAGRAAGGCTGCW (Motif 18)

C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
Reverse Opposite:
C G A T A T C G G T A C C G T A A C T G A T G C A T G C G C A T A G C T A G C T T A G C A C G T A C T G A C G T A T G C A G C T
p-value:1e-9
log p-value:-2.177e+01
Information Content per bp:1.585
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif131.4
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets63.6 +/- 21.4bp
Average Position of motif in Background48.2 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.51
Offset:7
Orientation:forward strand
Alignment:AGACAGRAAGGCTGCW
-------TWGTCTGV-
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGACAGRAAGGCTGCW
-AACAGGAAGT-----
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.49
Offset:3
Orientation:forward strand
Alignment:AGACAGRAAGGCTGCW
---CAAGATGGCGGC-
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.48
Offset:10
Orientation:forward strand
Alignment:AGACAGRAAGGCTGCW
----------GCTTCC
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

YY1(Zf)/Promoter/Homer

Match Rank:5
Score:0.47
Offset:3
Orientation:forward strand
Alignment:AGACAGRAAGGCTGCW
---CAAGATGGCGGC-
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:AGACAGRAAGGCTGCW
----ACAAAGGNBCCT
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.46
Offset:1
Orientation:forward strand
Alignment:AGACAGRAAGGCTGCW
-GTCACGCTCNCTGA-
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.46
Offset:2
Orientation:forward strand
Alignment:AGACAGRAAGGCTGCW
--ACAGGAAGTG----
 C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.46
Offset:-2
Orientation:forward strand
Alignment:--AGACAGRAAGGCTGCW
AAACAGACAAAGGAAT--
 A C G T A C G T C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.46
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGRAAGGCTGCW
CCAGACAG----------
 A C G T A C G T C T G A T A C G T G C A G T A C T G C A A T C G T C G A T C G A C G T A A T C G T A C G G T A C C G A T C A T G A T G C G C T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T